feces

Chronic kidney disease and its effect on microbiome metabolism

Patient receiving dialysis

Patient receiving dialysis

A substantial body of evidence points to the importance of renal filtration and the elimination of microbiome-derived metabolites.  Chronic kidney disease can lead to renal failure, which can have detrimental consequences for the elimination of microbiome metabolites.  Specifically, p­­-cresyl sulfate and indoxyl sulfate are cometabolites between human metabolism and microbiome fermentation.  Kidney failure or loss of renal function can lead to retention of these metabolites, and they can induce toxic harm by remaining in systemic circulation.  While there has been significant interest in this field, much is unknown regarding CKD’s influence on microbiota function and metabolism.  Researchers in Belgium sought to address this and identify what role CKD would have on the microbiota metabolism in the colon in patients on hemodialysis. 

The experimenters examined 20 patients on hemodialysis.  These fecal metabolites profiles of these patients were compared to 20 healthy controls using gas chromatography-mass spectrometry.  Initial observations revealed that healthy controls had a significantly higher number of volatile organic compounds (VOCs) – an indicator of microbiota metabolism - as compared to the patients on hemodialysis.  After adjusting the data for statistical confounders and discriminating VOCs between groups, the researchers determined that 81 individual VOCs were significantly different between hemodialysis patients and healthy controls.  Consistent with previous findings and known clinical conditions, both p-cresol and indole were significantly upregulated in hemodialysis patients.  A major confounder in this study is diet, as hemodialysis patients are on a very restricted diet, and as we know, dietary intake impacts microbiome composition and metabolism.  The researchers conducted the same analysis with the hemodialysis patients with household contacts who were on the same diets.  Interestingly, no significant difference in VOCs was observed between groups. 

The researchers demonstrated that CKD patients on hemodialysis experience an altered microbiota metabolism; however, dietary influence may be driving this effect rather than loss of renal function.  It was good to see the researchers included the household controls, as this evidence suggests renal function by itself may not have direct impacts on gut microbiota function.  Regardless, much of the CKD-microbiome research to this date has focused on the microbiome’s role in CKD or CKD-mediated downstream maladies.  It was interesting to see a study that took the opposite approach, as we know microbiome health is important for homeostatic mechanisms that maintain a healthy body.  

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The views expressed in the blog are solely those of the author of the blog and not necessarily the American Microbiome Institute or any of our scientists, sponsors, donors, or affiliates.

Insects may be contributing to antibiotic resistance

A review in Applied and Environmental Microbiology from earlier this year provided evidence for an elusive link in antibiotic resistance.  Livestock that are used for food are fed antibiotics to increase their body mass.  This creates a selective pressure for antibiotic resistance in their gut, and it is well known that many antibiotic resistant strains originate in these animals.  There is now mounting evidence that the antibiotic resistant strains of bacteria seen in humans are actually those same strains that originated from livestock.  How, though, is this antibiotic resistance being transferred from animals to humans?  According to this review: insects!

The authors detail studies showing that the feces of livestock animals contain many antibiotic resistant bacteria.  Other studies have shown that many insects found in farms can acquire these antibiotic resistant strains in their own guts by feeding off the feces of the animals.  The connection to humans is demonstrated in studies showing that when insects land on human food to eat, they can transfer their gut microbiome to these surfaces.  Thus the vector of antibiotic resistance between animals and humans is the guts of insects.  Furthermore, the authors show the same horizontal gene transfer that spreads antibiotic resistance in the guts of animals and humans also occurs in insects.

The authors of this article conclude that there should be an increase in pest control in farms, restaurants, and kitchens.  Antibiotic resistance is a growing problem, and small measures like keeping flies away from our food are certainly worthwhile.  Still, the most obvious solution is to outlaw antibiotic use in livestock all together, something that Europe has done since 2006.

Please email blog@MicrobiomeInstitute.org for any comments, news, or ideas for new blog posts.

The views expressed in the blog are solely those of the author of the blog and not necessarily the American Microbiome Institute or any of our scientists, sponsors, donors, or affiliates.